Key:
Player - Player awarded to the drafting team
Player - Player already awarded to another team
Player
- Player doesn't fit on team due to roster maximums
| D-Town | Kazuo Matsui | Armando Benitez | Jeromy Burnitz |
| New Jersey | Bret Boone | Edwin Jackson | Eddie Guardado |
| Minnesota | Robb Nen | Jarrod Washburn | Kevin Millar |
| Wichita | Mark Redman | Shawn Green | Jeremy Bonderman |
| San Diego |
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Ray Durham |
| Mike Lieberthal | Grady Sizemore | ||
| Boggy Creek |
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Greg Miller |
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| Scott Hairston | John Thomson | ||
| Springfield | Scott Spiezio | Christian Guzman | J.C. Romero |
| San Francisco |
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David Eckstein |
| Al Leiter | Braden Looper | ||
| Milford |
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Carlos E. Hernandez |
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| Chad Cordero | Chase Utley | ||
| Nordeast |
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| Bob Wickman | Clint Nageotte |
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| Jon Lieber | |||
| Brewster | D'Angelo Jimenez | Aaron Miles |
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| Aquilino Lopez | |||
| Las Vegas |
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Woody Williams |
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Merkin Valdez | |
| Dallas McPherson | |||
| Copenhagen |
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Michael Young |
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Chad Gaudin | Chad Harville | |
| Angleton |
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Jeff Weaver |
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| Tony Armas Jr. | Brad Fullmer | ||
| Wheatland | Russ Branyan | Jason LaRue | Jorge Sosa |
| Boar's |
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Latroy Hawkins |
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Justin Duchscherer | Eric Dubose |